getCoverage: Get coverage of interactions
In MOMA: Multi Omic Master Regulator Analysis
Description
Usage
Arguments
Value
View source: R/genomic.saturation.r
Description
Get coverage of interactions
Usage
1
2
3
4
5
6
7
8
getCoverage(
MomaObject,
cMR.ranking,
viper.samples,
topN = 100,
mutation.filter = NULL,
verbose = FALSE
)
Arguments
MomaObject
A numeric vector with cluster membership, names are samples
cMR.ranking
A vector entrez IDs, in order
viper.samples
Calculate the genomic coverage only for these sample
topN
Compute coverage for only the top -N- Master Regulators
mutation.filter
Retain only mutation events in this (positive) list
Value
A list of lists, indexed by sample name, with coverage statistics
for each sample
MOMA documentation built on Nov. 8, 2020, 6:01 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/genomic.saturation.r
Description
Get coverage of interactions
Usage
1 2 3 4 5 6 7 8 | getCoverage(
MomaObject,
cMR.ranking,
viper.samples,
topN = 100,
mutation.filter = NULL,
verbose = FALSE
)
|
Arguments
MomaObject |
A numeric vector with cluster membership, names are samples |
cMR.ranking |
A vector entrez IDs, in order |
viper.samples |
Calculate the genomic coverage only for these sample |
topN |
Compute coverage for only the top -N- Master Regulators |
mutation.filter |
Retain only mutation events in this (positive) list |
Value
A list of lists, indexed by sample name, with coverage statistics for each sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.