getCoverage: Get coverage of interactions

Description Usage Arguments Value

View source: R/genomic.saturation.r

Description

Get coverage of interactions

Usage

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getCoverage(
  MomaObject,
  cMR.ranking,
  viper.samples,
  topN = 100,
  mutation.filter = NULL,
  verbose = FALSE
)

Arguments

MomaObject

A numeric vector with cluster membership, names are samples

cMR.ranking

A vector entrez IDs, in order

viper.samples

Calculate the genomic coverage only for these sample

topN

Compute coverage for only the top -N- Master Regulators

mutation.filter

Retain only mutation events in this (positive) list

Value

A list of lists, indexed by sample name, with coverage statistics for each sample


MOMA documentation built on Nov. 8, 2020, 6:01 p.m.