mapScoresCnvBand: Map scores to cytoband location

In MOMA: Multi Omic Master Regulator Analysis

Description

Map scores to cytoband location

Usage

mapScoresCnvBand(
  mapping,
  diggit.interactions,
  from.p = FALSE,
  pos.nes.only = TRUE
)

Arguments

mapping	a named vector of genomic locations/cytoband IDs. names are the gene names for each–i.e. a many to one mapping from HUGO or entrez IDs to cytoband location
diggit.interactions	list indexed by MR/TF name in Entrez Space
from.p	DIGGIT interactions are in p-value format instead of z-score (default=FALSE)
pos.nes.only	Only consider positive associations with NES scores (default=TRUE) each points to a named vector of NES / z-scores associated with entrez IDs for each interacting event.

Value

A list of input scores, now named by cytoband location

MOMA documentation built on Nov. 8, 2020, 6:01 p.m.