makeSaturationPlots: Main function to generate the summary plots of the analysis

Description Usage Arguments Value Examples

View source: R/make.saturation.plots.r

Description

Main function to generate the summary plots of the analysis

Usage

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makeSaturationPlots(
  momaObj,
  clustering.solution = NULL,
  important.genes = NULL,
  fCNV = NULL,
  max.events = 30
)

Arguments

momaObj

: momaObj that has already run the saturationCalculation function

clustering.solution

: clustering vector with sample names and cluster designations

important.genes

: vector of gene names to prioritize when plotting. Can be general genes of interest, oncogenes, tumor supressors etc

fCNV

: vector of confirmed functional CNVs if calculated. Will filter for only those CNVs

max.events

: maximum number of events to plot for the oncoplots

Value

object with both types of summary plot for each subtype

Examples

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## Not run: 
makeSaturationPlots(momaObj, max.events = 20)

## End(Not run)

MOMA documentation built on Nov. 8, 2020, 6:01 p.m.