rea: This function calculates an Enrichment Score of Association...

Description Usage Arguments Value

View source: R/diggit.r

Description

This function calculates an Enrichment Score of Association based on how the features rank on the samples sorted by a specific gene

Usage

1
rea(eset, regulon, minsize = 1, maxsize = Inf, event.type = NA, verbose)

Arguments

eset

Numerical matrix

regulon

A list with genomic features as its names and samples as its entries, indicating presence of event

minsize

The minimum number of events to use when calculating enrichment

maxsize

The maximum number of events to use when calculating enrichment

event.type

Type of event being analyzed

verbose

whether to print extra progress statements

Value

A list containing two elements:

groups

Regulon-specific NULL model containing the enrichment scores

ss

Direction of the regulon-specific NULL model


MOMA documentation built on Nov. 8, 2020, 6:01 p.m.