densityPlot: densityPlot

In NanoStringQCPro: Quality metrics and data processing methods for NanoString mRNA gene expression data

Description

Plot the density of counts for all endogenous and housekeeping genes for each sample in an RccSet object

Usage

densityPlot(M, log.transform = FALSE, pdata, covar, ...)

Arguments

M	One of the matrices from the assayData() of an RccSet object (make sure to set the log.transform parameter accordingly)
log.transform	Scalar boolean
pdata	pData() of the RccSet object
covar	character; colname in pData() that can be used to label genes by a category of interest (passed on to colByCovar)
...	additional plotting parameters

Value

A density plot

Author(s)

Dorothee Nickles

NanoStringQCPro documentation built on Nov. 8, 2020, 8:11 p.m.