getBlankLabel: Get the SampleType value that indicates blank samples
In NanoStringQCPro: Quality metrics and data processing methods for NanoString mRNA gene expression data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Returns the phenoData SampleType value that indicates blank samples (i.e. water runs).
This value is parsed from the single-quoted string enclosed by "blankLabel='...'"
in the varMetadata for SampleType.
Usage
1
2
## S4 method for signature 'RccSet'
getBlankLabel(rccSet, showWarnings = TRUE)
Arguments
rccSet
An RccSet
showWarnings
Logical. If FALSE, no warnings will be generated (if any).
Value
NULL if the SampleType column is missing altogether, NA if the varMetadata doesn't
have blankLabel recorded, or the blankLabel value otherwise.
Author(s)
Robert Ziman
Examples
1
2
data(example_rccSet)
blankLabel <- getBlankLabel(example_rccSet)
NanoStringQCPro documentation built on Nov. 8, 2020, 8:11 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Returns the phenoData SampleType value that indicates blank samples (i.e. water runs). This value is parsed from the single-quoted string enclosed by "blankLabel='...'" in the varMetadata for SampleType.
Usage
1 2 | ## S4 method for signature 'RccSet'
getBlankLabel(rccSet, showWarnings = TRUE)
|
Arguments
rccSet |
An RccSet |
showWarnings |
Logical. If FALSE, no warnings will be generated (if any). |
Value
NULL if the SampleType column is missing altogether, NA if the varMetadata doesn't have blankLabel recorded, or the blankLabel value otherwise.
Author(s)
Robert Ziman
Examples
1 2 | data(example_rccSet)
blankLabel <- getBlankLabel(example_rccSet)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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