negCtrlsPlot: negCtrlsPlot
In NanoStringQCPro: Quality metrics and data processing methods for NanoString mRNA gene expression data
Description
Usage
Arguments
Details
Value
Author(s)
Description
Plot negative controls across all samples in an RccSet object
Usage
1
2
## S4 method for signature 'RccSet'
negCtrlsPlot(rccSet)
Arguments
rccSet
An RccSet object
Details
In the second panel, boxplots are colored by lane (as specified in the pData slot). Bars on top of
the panel indicate the stage position for each cartridge/sample (as specified in the pData slot).
Value
A plot with two panels: one showing boxplots for the individual negative controls across all samples, and
one showing boxplots for the negative control counts for each individual sample (lane-specific background).
Author(s)
Dorothee Nickles
NanoStringQCPro documentation built on Nov. 8, 2020, 8:11 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Plot negative controls across all samples in an RccSet object
Usage
1 2 | ## S4 method for signature 'RccSet'
negCtrlsPlot(rccSet)
|
Arguments
rccSet |
An RccSet object |
Details
In the second panel, boxplots are colored by lane (as specified in the pData slot). Bars on top of the panel indicate the stage position for each cartridge/sample (as specified in the pData slot).
Value
A plot with two panels: one showing boxplots for the individual negative controls across all samples, and one showing boxplots for the negative control counts for each individual sample (lane-specific background).
Author(s)
Dorothee Nickles
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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