lodAssess: lodAssess
In NanoStringQCPro: Quality metrics and data processing methods for NanoString mRNA gene expression data
Description
Usage
Arguments
Value
Author(s)
Description
Assess how many genes in each sample in an RccSet object are below the
limit of detection. (The current implementation does a straightforward
column sum on the presence/absence matrix (paData) in assayData.)
Usage
1
2
## S4 method for signature 'RccSet'
lodAssess(rccSet)
Arguments
rccSet
An RccSet object
Value
A numeric vector giving the number of missing genes (endogenous and
housekeeping genes) for each sample in an RccSet. If paData is not
found in the input's assayData, NULL is returned.
Author(s)
Dorothee Nickles
NanoStringQCPro documentation built on Nov. 8, 2020, 8:11 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Assess how many genes in each sample in an RccSet object are below the limit of detection. (The current implementation does a straightforward column sum on the presence/absence matrix (paData) in assayData.)
Usage
1 2 | ## S4 method for signature 'RccSet'
lodAssess(rccSet)
|
Arguments
rccSet |
An RccSet object |
Value
A numeric vector giving the number of missing genes (endogenous and housekeeping genes) for each sample in an RccSet. If paData is not found in the input's assayData, NULL is returned.
Author(s)
Dorothee Nickles
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.