pdata_fdata_adata.to.rccSet: pdata_fdata_adata.to.rccSet

In NanoStringQCPro: Quality metrics and data processing methods for NanoString mRNA gene expression data

Description

Second stage of readRccBatch()/readRccCollectorToolExport() – not intended for external use.

Usage

pdata_fdata_adata.to.rccSet(pdata_fdata_adata)

Arguments

pdata_fdata_adata

List containing the pdata, fdata, and adata returned by rccFiles.to.pdata_fdata_adata() or nSolverCsv.to.pdata_fdata_adata().

Details

Note that a pseudo-count of 1 is always added to all measurements, to enable subsequent log transformation of the data in cases where zero-counts are present.

N.B. The function currently expects certain columns to be present in pdata_fdata_a_data$pdata.m, and it converts these to numerics. These expectations should be incorporated into the class definition, and conversion should only take place with a warning. Future updates will address this.

Value

An RccSet whose contents reflect the input data.

Author(s)

Robert Ziman

NanoStringQCPro documentation built on Nov. 8, 2020, 8:11 p.m.