geneClustering: Gene clustering heatmap
In NanoStringQCPro: Quality metrics and data processing methods for NanoString mRNA gene expression data
Description
Usage
Arguments
Value
Author(s)
View source: R/NanoStringQualityMetrics.R
Description
Gene clustering heatmap
Usage
1
geneClustering(rccSet, outputFile, main = "Gene clustering", covar = NULL)
Arguments
rccSet
An RccSet
outputFile
Output PNG filename
main
Plot title
covar
Colname in the rccSet's fData that can be used to label genes by a category of interest
Value
A PNG file showing clustering of genes by correlation across an experiment
Positive and negative control probes and any zero-variance genes (typically
housekeeping genes) are omitted from the heatmap.
The width and height of the PNG file are set to vary with the size of the input.
Author(s)
Dorothee Nickles, Robert Ziman
NanoStringQCPro documentation built on Nov. 8, 2020, 8:11 p.m.
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Description Usage Arguments Value Author(s)
View source: R/NanoStringQualityMetrics.R
Description
Gene clustering heatmap
Usage
1 | geneClustering(rccSet, outputFile, main = "Gene clustering", covar = NULL)
|
Arguments
rccSet |
An RccSet |
outputFile |
Output PNG filename |
main |
Plot title |
covar |
Colname in the rccSet's fData that can be used to label genes by a category of interest |
Value
A PNG file showing clustering of genes by correlation across an experiment Positive and negative control probes and any zero-variance genes (typically housekeeping genes) are omitted from the heatmap. The width and height of the PNG file are set to vary with the size of the input.
Author(s)
Dorothee Nickles, Robert Ziman
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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