Files in NanoStringQCPro
Quality metrics and data processing methods for NanoString mRNA gene expression data
NEWS
NAMESPACE
DESCRIPTION
data/example_rccSet.rdata
R/NanoStringQualityMetrics.R
R/utils.R
R/NanoStringQCreport.R
R/NanoStringQCPro-package.r
R/NanoStringConvenience.R
R/example_rccSet.R
R/previewPNG.R
R/0_RccSet-class.R
R/BackgroundSubtractionFunctions.R
man/negCtrlsPairs.Rd
man/ctrlsZprimePlot.Rd
man/addCodesetAnnotation.Rd
man/checkRccSet.Rd
man/presAbsCall.Rd
man/fovPlot.Rd
man/cutoffByVar.Rd
man/makeQCReport.Rd
man/RccSet-class.Rd
man/readRccBatch.Rd
man/lodAssess.Rd
man/pdata_fdata_adata.to.rccSet.Rd
man/negCtrlsByLane.Rd
man/posSumVsAllSumPlot.Rd
man/negCtrlsPlot.Rd
man/negCtrlsByLane_verticalPlot.Rd
man/bdPlot.Rd
man/myCols.Rd
man/sampleClustering.Rd
man/RccSet.Rd
man/addQCFlags.Rd
man/readCdrDesignData.Rd
man/flagSamplesCount.Rd
man/allSumPlot.Rd
man/example_rccSet.Rd
man/scatterPair.Rd
man/ctrlsOverviewPlot.Rd
man/NanoStringQCPro.Rd
man/rccFiles.to.pdata_fdata_adata.Rd
man/lodPlot.Rd
man/getSpikeInInput.Rd
man/contentNorm.Rd
man/newRccSet.Rd
man/getBlankLabel.Rd
man/copyRccSet.Rd
man/posNormFactPlot.Rd
man/colByFun.Rd
man/posCtrlNorm.Rd
man/posR2Plot.Rd
man/readRcc.Rd
man/pcaPlot.Rd
man/flagSamplesCtrl.Rd
man/densityPlot.Rd
man/subtractBackground.Rd
man/buildCodesetAnnotation.Rd
man/countsInBlankSamples_verticalPlot.Rd
man/geneClustering.Rd
man/preprocRccSet.Rd
man/readRccCollectorToolExport.Rd
man/nSolverCsv.to.pdata_fdata_adata.Rd
man/iqrPlot.Rd
man/previewPNG.Rd
man/readRlf.Rd
man/assessHousekeeping.Rd
man/getBackground.Rd
man/posSlopePlot.Rd
man/zfacFun.Rd
man/dCoVar.Rd
man/flagSamplesTech.Rd
man/panelCor.Rd
man/nSolverBackground.Rd
man/posRatioPlot.Rd
man/cutoffByMMAD.Rd
man/colByCovar.Rd
inst/doc/vignetteNanoStringQCPro.pdf
inst/extdata/CDR/CDR-DesignData.csv
inst/extdata/RLF/NQCP_example.rlf
inst/extdata/nSolver/RCC_collector_tool_export.csv
inst/extdata/extraPdata/SampleType.txt
inst/extdata/RCC/20140604_C2-unstim_C2-unstim_11.RCC
inst/extdata/RCC/20140604_C3-stim_C3-stim_02.RCC
inst/extdata/RCC/20140604_C2-unstim_C2-unstim_02.RCC
inst/extdata/RCC/20140604_C3-stim_C3-stim_09.RCC
inst/extdata/RCC/20140604_C2-unstim_C2-unstim_12.RCC
inst/extdata/RCC/20140604_C1-unstim_C1-unstim_05.RCC
inst/extdata/RCC/20140604_C1-unstim_C1-unstim_12.RCC
inst/extdata/RCC/20140604_C2-unstim_C2-unstim_10.RCC
inst/extdata/RCC/20140604_C3-stim_C3-stim_11.RCC
inst/extdata/RCC/20140604_C1-unstim_C1-unstim_03.RCC
inst/extdata/RCC/20140604_C1-unstim_C1-unstim_08.RCC
inst/extdata/RCC/20140604_C2-unstim_C2-unstim_04.RCC
inst/extdata/RCC/20140604_C4-stim_C4-stim_04.RCC
inst/extdata/RCC/20140604_C4-stim_C4-stim_07.RCC
inst/extdata/RCC/20140604_C4-stim_C4-stim_03.RCC
inst/extdata/RCC/20140604_C1-unstim_C1-unstim_04.RCC
inst/extdata/RCC/20140604_C2-unstim_C2-unstim_10_2.RCC
inst/extdata/RCC/20140604_C4-stim_C4-stim_12.RCC
inst/extdata/RCC/20140604_C3-stim_C3-stim_07.RCC
inst/extdata/RCC/20140604_C3-stim_C3-stim_01.RCC
inst/extdata/RCC/20140604_C1-unstim_C1-unstim_01.RCC
inst/extdata/RCC/20140604_C3-stim_C3-stim_04.RCC
inst/extdata/RCC/20140604_C4-stim_C4-stim_10.RCC
inst/extdata/RCC/20140604_C2-unstim_C2-unstim_06.RCC
inst/extdata/RCC/20140604_C4-stim_C4-stim_06.RCC
inst/misc/qcReportHeader.html
inst/templates/QualityControlReportTemplate.Rmd
inst/examples/main.R
