sampleClustering: Clustering by sample correlation
In NanoStringQCPro: Quality metrics and data processing methods for NanoString mRNA gene expression data
Description
Usage
Arguments
Value
Author(s)
Description
Clustering by sample correlation
Usage
1
2
3
4
## S4 method for signature 'RccSet'
sampleClustering(rccSet, outputFile,
main = "Sample correlations in raw data", annCol = NULL,
covar = "SampleType")
Arguments
rccSet
An RccSet
outputFile
Output PNG filename
main
Plot title
annCol
See aheatmap
covar
Covariate (e.g. "SampleType")
Value
A PNG file showing clustering of samples by correlation. Any zero-variance
samples are omitted from the heatmap.
The width and height of the PNG file are set to vary with the size of the input.
Author(s)
Dorothee Nickles, Robert Ziman
NanoStringQCPro documentation built on Nov. 8, 2020, 8:11 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Clustering by sample correlation
Usage
1 2 3 4 | ## S4 method for signature 'RccSet'
sampleClustering(rccSet, outputFile,
main = "Sample correlations in raw data", annCol = NULL,
covar = "SampleType")
|
Arguments
rccSet |
An RccSet |
outputFile |
Output PNG filename |
main |
Plot title |
annCol |
See |
covar |
Covariate (e.g. "SampleType") |
Value
A PNG file showing clustering of samples by correlation. Any zero-variance samples are omitted from the heatmap. The width and height of the PNG file are set to vary with the size of the input.
Author(s)
Dorothee Nickles, Robert Ziman
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.