readRcc: Read an .RCC file

In NanoStringQCPro: Quality metrics and data processing methods for NanoString mRNA gene expression data

Description

Parse an .RCC file into a list with each part of the file (Header, Sample_Attributes, Lane_Attributes, Code_Summary, etc) stored as a vector or data frame.

Usage

readRcc(rcc, removeSpikeInLabels = TRUE)

Arguments

rcc	Path to the .RCC file.
removeSpikeInLabels	Logical. If TRUE (the default), RNA “spike-in” input labels (if any) in the GeneName for positive and negative control probes will be removed.

Value

A list where each element holds the contents of one part of the .RCC file (Header, Sample_Attributes, Lane_Attributes, Code_Summary, etc) as a vector or data frame.

Author(s)

Robert Ziman

Examples

rcc <- system.file("extdata", "RCC", "20140604_C1-unstim_C1-unstim_01.RCC", package="NanoStringQCPro")
rcc.ls <- readRcc(rcc)

Example output

NanoStringQCPro documentation built on Nov. 8, 2020, 8:11 p.m.