QCstats.plot: Make plot of ORFik QCreport

In ORFik: Open Reading Frames in Genomics

Description

From post-alignment QC relative to annotation, make a plot for all samples. Will contain among others read lengths, reads overlapping leaders, cds, trailers, mRNA / rRNA etc.

Usage

QCstats.plot(stats, output.dir = NULL)

Arguments

stats	path to ORFik QC stats .csv file, or the experiment object.
output.dir	NULL or character path, default: NULL, plot not saved to disc. If defined saves plot to that directory with the name "/STATS_plot.png".

Value

ggplot object of the the statistics data

Examples

df <- ORFik.template.experiment()[3,]
## First make QC report
# QCreport(df)
## Now you can get plot
# QCstats.plot(df)

ORFik documentation built on March 27, 2021, 6 p.m.