Takes a folder with multiple Log.final.out files from STAR, and create a multiQC report. This is automatically run with STAR.align.folder function.
STAR.allsteps.multiQC(folder, steps = "auto")
path to main output folder of STAR run. The folder that contains /aligned/, "/trim/, "contaminants_depletion" etc. To find the LOGS folders in, to use for summarized statistics.
a character, default "auto". Find which steps you did. If manual, a combination of "tr-co-ge". See STAR alignment functions for description.
data.table of main statistics, plots and data saved to disc. Named: "/00_STAR_LOG_plot.png" and "/00_STAR_LOG_table.csv"
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