export.bedo: Store GRanges object as .bedo

In ORFik: Open Reading Frames in Genomics

Description

.bedo is .bed ORFik, an optimized bed format for coverage reads with read lengths .bedo is a text based format with columns (6 maximum):
1. chromosome
2. start
3. end
4. strand
5. ref width (cigar # M's, match/mismatch total)
6. duplicates of that read

Usage

export.bedo(object, out)

Arguments

object	a GRanges object
out	a character, location on disc (full path)

Details

Positions are 1-based, not 0-based as .bed. End will be removed if all ends equals all starts. Import with import.bedo

Value

NULL, object saved to disc

ORFik documentation built on March 27, 2021, 6 p.m.