filterUORFs: Remove uORFs that are false CDS hits
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Value
See Also
Description
This is a strong filtering, so that even if the cds is on another transcript
, the uORF is filtered out, this is because there is no way of knowing by
current ribo-seq, rna-seq experiments.
Usage
1
filterUORFs(uorfs, cds)
Arguments
uorfs
(GRangesList), the uORFs to filter
cds
(GRangesList), the coding sequences (main ORFs on transcripts),
to filter against.
Value
(GRangesList) of filtered uORFs
See Also
Other uorfs:
addCdsOnLeaderEnds(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithStartInsideCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()
ORFik documentation built on March 27, 2021, 6 p.m.
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Description Usage Arguments Value See Also
Description
This is a strong filtering, so that even if the cds is on another transcript , the uORF is filtered out, this is because there is no way of knowing by current ribo-seq, rna-seq experiments.
Usage
1 | filterUORFs(uorfs, cds)
|
Arguments
uorfs |
(GRangesList), the uORFs to filter |
cds |
(GRangesList), the coding sequences (main ORFs on transcripts), to filter against. |
Value
(GRangesList) of filtered uORFs
See Also
Other uorfs:
addCdsOnLeaderEnds(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithStartInsideCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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