hasHits: Hits from reads

Description Usage Arguments Value

View source: R/feature_helpers.R

Description

Finding GRanges groups that have overlap hits with reads Similar to

Usage

1
hasHits(grl, reads, keep.names = FALSE, overlaps = NULL)

Arguments

grl

a GRangesList or GRanges object

reads

a GRanges, GAlignment or GAlignmentPairs object

keep.names

logical (F), keep names or not

overlaps

default NULL, if not null must be countOverlaps(grl, reads), input if you have it already.

Value

a list of logicals, T == hit, F == no hit


ORFik documentation built on March 27, 2021, 6 p.m.