mainNames: Get main name from variant name

In ORFik: Open Reading Frames in Genomics

Description

Used to standardize nomeclature for experiments.
Example: RFP is main naming, but a variant is ribo-seq ribo-seq will then be renamed to RFP

Usage

mainNames(names, dt)

Arguments

names	a character vector of names that must exist in dt$allNames
dt	a data.table with 2 columns (mainName, allNames)

Value

a data.table with 2 columns, the main name, and all name variants of the main name in second column as a list.

See Also

Other experiment_naming: cellLineNames(), conditionNames(), libNames(), repNames(), stageNames(), tissueNames()

ORFik documentation built on March 27, 2021, 6 p.m.