makeExonRanks: Make grouping by exons ranks
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Details
Value
View source: R/ranges_helpers.R
Description
There are two ways to make vector of exon ranking:
1. Iterate per exon in ORF, byTranscript = FALSE
2. Iterate per ORF in transcript, byTranscript = TRUE.
Usage
1
makeExonRanks(grl, byTranscript = FALSE)
Arguments
grl
a GRangesList
byTranscript
logical (default: FALSE), groups orfs by transcript
name or ORF name, if ORfs are by transcript, check duplicates.
Details
Either by transcript or by original groupings.
Must be ordered, so that same transcripts are ordered together.
Value
an integer vector of indices for exon ranks
ORFik documentation built on March 27, 2021, 6 p.m.
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Description Usage Arguments Details Value
View source: R/ranges_helpers.R
Description
There are two ways to make vector of exon ranking: 1. Iterate per exon in ORF, byTranscript = FALSE 2. Iterate per ORF in transcript, byTranscript = TRUE.
Usage
1 | makeExonRanks(grl, byTranscript = FALSE)
|
Arguments
grl |
a |
byTranscript |
logical (default: FALSE), groups orfs by transcript name or ORF name, if ORfs are by transcript, check duplicates. |
Details
Either by transcript or by original groupings. Must be ordered, so that same transcripts are ordered together.
Value
an integer vector of indices for exon ranks
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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