matchSeqStyle: A wrapper for seqlevelsStyle

In ORFik: Open Reading Frames in Genomics

Description

To make sure chromosome naming is correct (chr1 vs 1 vs I etc)

Usage

matchSeqStyle(range, chrStyle = NULL)

Arguments

range	a ranged object, (GRanges, GAlignment etc)
chrStyle	a GRanges object, TxDb, FaFile, or a seqlevelsStyle (Default: NULL) to get seqlevelsStyle from. Is chromosome 1 called chr1 or 1, is mitocondrial chromosome called MT or chrM etc. Will use 1st seqlevel-style if more are present. Like: c("NCBI", "UCSC") -> pick "NCBI"

Value

a GAlignment/GRanges object depending on input.

ORFik documentation built on March 27, 2021, 6 p.m.