optimizeReads: Find optimized subset of valid reads

Description Usage Arguments Value See Also

Description

Keep only the ones that overlap within the grl ranges. Also sort them in the end

Usage

1
optimizeReads(grl, reads)

Arguments

grl

a GRangesList or GRanges object

reads

a GRanges, GAlignment or GAlignmentPairs object

Value

the reads as GRanges, GAlignment or GAlignmentPairs

See Also

Other utils: bedToGR(), convertToOneBasedRanges(), export.bed12(), export.wiggle(), fimport(), findFa(), fread.bed(), readBam(), readWig()


ORFik documentation built on March 27, 2021, 6 p.m.