orfID: Get id's for each orf

In ORFik: Open Reading Frames in Genomics

Description

These id's can be uniqued by isoform etc, this is not supported by GenomicRanges.

Usage

orfID(grl, with.tx = FALSE)

Arguments

grl	a GRangesList
with.tx	a boolean, include transcript names, if you want unique orfs, so that they dont have multiple versions on different isoforms, set it to FALSE.

Value

a character vector of ids, 1 per orf

See Also

Other ORFHelpers: defineTrailer(), longestORFs(), mapToGRanges(), startCodons(), startSites(), stopCodons(), stopSites(), txNames(), uniqueGroups(), uniqueOrder()

ORFik documentation built on March 27, 2021, 6 p.m.