removeORFsWithStartInsideCDS: Remove ORFs that have start site within the CDS
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Value
See Also
Description
Remove ORFs that have start site within the CDS
Usage
1
removeORFsWithStartInsideCDS(grl, cds)
Arguments
grl
(GRangesList), the ORFs to filter
cds
(GRangesList), the coding sequences (main ORFs on transcripts),
to filter against.
Value
(GRangesList) of filtered uORFs
See Also
Other uorfs:
addCdsOnLeaderEnds(),
filterUORFs(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()
ORFik documentation built on March 27, 2021, 6 p.m.
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Description Usage Arguments Value See Also
Description
Remove ORFs that have start site within the CDS
Usage
1 | removeORFsWithStartInsideCDS(grl, cds)
|
Arguments
grl |
(GRangesList), the ORFs to filter |
cds |
(GRangesList), the coding sequences (main ORFs on transcripts), to filter against. |
Value
(GRangesList) of filtered uORFs
See Also
Other uorfs:
addCdsOnLeaderEnds(),
filterUORFs(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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