subsetCoverage: Subset GRanges to get coverage.

In ORFik: Open Reading Frames in Genomics

Description

GRanges object should be beforehand tiled to size of 1. This subsetting takes account for strand.

Usage

subsetCoverage(cov, y)

Arguments

cov	A coverage object from coverage()
y	GRanges object for which coverage should be extracted

Value

numeric vector of coverage of input GRanges object

See Also

Other features: computeFeaturesCage(), computeFeatures(), countOverlapsW(), disengagementScore(), distToCds(), distToTSS(), entropy(), floss(), fpkm_calc(), fpkm(), fractionLength(), initiationScore(), insideOutsideORF(), isInFrame(), isOverlapping(), kozakSequenceScore(), orfScore(), rankOrder(), ribosomeReleaseScore(), ribosomeStallingScore(), startRegionCoverage(), startRegion(), stopRegion(), translationalEff()

ORFik documentation built on March 27, 2021, 6 p.m.