trim_detection: Add trimming info to QC report
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Value
View source: R/report_helpers.R
Description
Only works if alignment was done using ORFik with STAR.
Usage
1
trim_detection(df, finals, out.dir)
Arguments
df
an ORFik experiment
finals
a data.table with current output from QCreport
out.dir
optional output directory, default:
dirname(df$filepath[1]).
Will make a folder called "QC_STATS" with all results in this directory.
Value
a data.table of the update finals object with trim info
ORFik documentation built on March 27, 2021, 6 p.m.
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Description Usage Arguments Value
View source: R/report_helpers.R
Description
Only works if alignment was done using ORFik with STAR.
Usage
1 | trim_detection(df, finals, out.dir)
|
Arguments
df |
an ORFik |
finals |
a data.table with current output from QCreport |
out.dir |
optional output directory, default:
|
Value
a data.table of the update finals object with trim info
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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