validSeqlevels: Helper function to find overlaping seqlevels
In ORFik: Open Reading Frames in Genomics
Description
Usage
Arguments
Value
See Also
Description
Keep only seqnames in reads that are in grl
Useful to avoid seqname warnings in bioC
Usage
1
validSeqlevels(grl, reads)
Arguments
grl
a GRangesList or GRanges object
reads
a GRanges, GAlignment or GAlignmentPairs object
Value
a character vector of valid seqlevels
See Also
Other validity:
checkRFP(),
checkRNA(),
is.ORF(),
is.gr_or_grl(),
is.grl(),
is.range(),
validGRL()
ORFik documentation built on March 27, 2021, 6 p.m.
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Description Usage Arguments Value See Also
Description
Keep only seqnames in reads that are in grl Useful to avoid seqname warnings in bioC
Usage
1 | validSeqlevels(grl, reads)
|
Arguments
grl |
a |
reads |
a GRanges, GAlignment or GAlignmentPairs object |
Value
a character vector of valid seqlevels
See Also
Other validity:
checkRFP(),
checkRNA(),
is.ORF(),
is.gr_or_grl(),
is.grl(),
is.range(),
validGRL()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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