Files in PharmacoGx
Analysis of Large-Scale Pharmacogenomic Data
.Rinstignore
NEWS.md
README.md
NAMESPACE
DESCRIPTION
TODO
R/filterNoisyCurves.R
R/connectivityScore.R
R/methods-name.R
R/methods-phenoInfo.R
R/rankGeneDrugPerturbation.R
R/intersectPSets.R
R/callingWaterfall.R
R/methods-sensitivityProfiles.R
R/computeAmax.R
R/datasets.R
R/methods-summarizeMolecularProfiles.R
R/geneDrugPerturbation.R
R/methods-molecularProfiles.R
R/GWC.R
R/drugPerturbationSig.R
R/methods-sensitivitySlotToLongTable.R
R/methods-subsetTo.R
R/LogLogisticRegression.R
R/methods-molecularProfilesSlot.R
R/downloadSignatures.R
R/computeABC.R
R/downloadPSet.R
R/methods-pertNumber.R
R/class-SignatureClass.R
R/GR.R
R/computeSlope.R
R/cosinePerm.R
R/methods-fNames.R
R/methods-[.R
R/drugDoseResponseCurve.R
R/computeDrugSensitivity.R
R/methods-sensitivitySlot.R
R/methods-sensitivityRaw.R
R/SanityCheck.R
R/methods-sensitivityMeasures.R
R/methods-summarizeSensitivityProfiles.R
R/computeIC50.R
R/methods-drugSensitivitySig.R
R/geneDrugSensitivity.R
R/methods-intersect.R
R/MatthewCor.R
R/computeAUC_old.R
R/methods-mDataNames.R
R/methods-cellNames.R
R/methods-drugNames.R
R/computeICn.R
R/adaptiveMatthewCor.R
R/methods-cellInfo.R
R/methods-drugInfo.R
R/getRawSensitivityMatrix.R
R/globals.R
R/plotPSig.R
R/rankGeneDrugSensitivity.R
R/methods-dateCreated.R
R/methods-featureInfo.R
R/computeDSS.R
R/methods-sensNumber.R
R/allGenerics.R
R/methods-sensitivityInfo.R
R/ComputeGR.R
R/class-PharmacoSet.R
R/computeAUC.R
inst/CITATION
inst/doc/PharmacoGx.Rmd
inst/doc/CreatingPharmacoSet.pdf
inst/doc/PharmacoGx.pdf
inst/doc/CreatingPharmacoSet.R
inst/doc/CreatingPharmacoSet.Rmd
inst/doc/PharmacoGx.R
build/vignette.rds
tests/startup.Rs
tests/testthat.R
tests/testthat/test_computeIC50.R
tests/testthat/subsetTo.CMAPsmaller.rds
tests/testthat/drug.perturbationSmall.rds
tests/testthat/test_unionList.R
tests/testthat/test_Hill.R
tests/testthat/startup.Rs
tests/testthat/featureInfo.GDSCsmall.rds
tests/testthat/drug.sensitivityGDSCSmall.rds
tests/testthat/sensitivityProfiles.GDSCsmall.rds
tests/testthat/fNames.GDSCsmall.rds
tests/testthat/drug.sensitivity.discreteGDSCSmall.rds
tests/testthat/cellNames.GDSCsmall.rds
tests/testthat/test_sanitizeInput.R
tests/testthat/molecularProfiles.GDSCsmall.rds
tests/testthat/test_summarizeSensitivityProfiles.R
tests/testthat/drug.sensitivity.MANOVAGDSCSmall.rds
tests/testthat/test_drugSensitivitySig.R
tests/testthat/test_logLogisticRegression.R
tests/testthat/test_drugPerturbationSig.R
tests/testthat/sensitivityMeasures.GDSCsmall.rds
tests/testthat/test_summarizeMolecularProfiles.R
tests/testthat/cellInfo.GDSCsmall.rds
tests/testthat/phenoInfo.GDSCsmall.rds
tests/testthat/test_subsetTo.R
tests/testthat/intersectedSmallDataStrict.rds
tests/testthat/test_intersectPSet.R
tests/testthat/test_computeABC.R
tests/testthat/test_PharmacoSetClass.R
tests/testthat/sensitivityInfo.GDSCsmall.rds
tests/testthat/drugNames.GDSCsmall.rds
tests/testthat/drugInfo.GDSCsmall.rds
tests/testthat/intersectedSmallData.rds
vignettes/header.tex
vignettes/PharmacoGx.Rmd
vignettes/manuscript.latex
vignettes/ecology.csl
vignettes/pharmacogx.bib
vignettes/CreatingPharmacoSet.Rmd
vignettes/knitcitations.bib
data/datalist
data/GDSCsmall.rda
data/CCLEsmall.rda
data/CMAPsmall.rda
data/HDAC_genes.rda
man/downloadPSet.Rd
man/plot.PharmacoSig.Rd
man/GDSCsmall.Rd
man/show-PharmacoSet-method.Rd
man/fNames-set-PharmacoSet-character-character-method.Rd
man/subsetTo-PharmacoSet-method.Rd
man/drugInfo-set.Rd
man/dim-PharmacoSet-method.Rd
man/checkPsetStructure.Rd
man/geneDrugSensitivity.Rd
man/CCLEsmall.Rd
man/drugSensitivitySig-PharmacoSet-method.Rd
man/cellInfo-set-PharmacoSet-data.frame-method.Rd
man/drugPerturbationSig.Rd
man/sensitivitySlotToLongTable-PharmacoSet-method.Rd
man/gwc.Rd
man/intersectPSet.Rd
man/CMAPsmall.Rd
man/filterNoisyCurves.Rd
man/computeSlope.Rd
man/drugNames.Rd
man/callingWaterfall.Rd
man/connectivityScore.Rd
man/computeAmax.Rd
man/dot-summarizeSensProfiles.Rd
man/showSigAnnot-PharmacoSig-method.Rd
man/summarizeMolecularProfiles-PharmacoSet-method.Rd
man/summarizeSensitivityProfiles-PharmacoSet-method.Rd
man/PharmacoSet-class.Rd
man/show-PharmacoSig-method.Rd
man/sub-PharmacoSet-ANY-ANY-ANY-method.Rd
man/drugDoseResponseCurve.Rd
man/cosinePerm.Rd
man/mcc.Rd
man/availablePSets.Rd
man/HDAC_genes.Rd
man/downloadPertSig.Rd
man/computeABC.Rd
man/amcc.Rd
man/computeICn.Rd
man/drugInfo.Rd
man/PharmacoSet.Rd
man/drugNames-set.Rd
man/logLogisticRegression.Rd
man/computeAUC.Rd
man/PharmacoSig.Rd
