createLongMatrix: Create a long matrix format for all kinds of input...
In PhyloProfile: PhyloProfile
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/parseMainInput.R
Description
Create a long matrix format for all kinds of input phylogenetic profiles
Usage
1
createLongMatrix(inputFile = NULL)
Arguments
inputFile
input profile file in orthoXML, multiple FASTA,
tab-delimited matrix format (wide or long).
Value
A data frame of input data in long-format containing seed gene IDs (
or orthologous group IDs), their orthologous proteins together with the
corresponding taxonomy IDs and values of (up to) two additional variables.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
xmlParser, fastaParser,
wideToLong
Examples
1
2
3
4
inputFile <- system.file(
"extdata", "test.main.wide", package = "PhyloProfile", mustWork = TRUE
)
createLongMatrix(inputFile)
PhyloProfile documentation built on March 27, 2021, 6:01 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/parseMainInput.R
Description
Create a long matrix format for all kinds of input phylogenetic profiles
Usage
1 | createLongMatrix(inputFile = NULL)
|
Arguments
inputFile |
input profile file in orthoXML, multiple FASTA, tab-delimited matrix format (wide or long). |
Value
A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
xmlParser, fastaParser,
wideToLong
Examples
1 2 3 4 | inputFile <- system.file(
"extdata", "test.main.wide", package = "PhyloProfile", mustWork = TRUE
)
createLongMatrix(inputFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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