finalProcessedProfile: An example of a final processed & filtered phylogenetic...

In PhyloProfile: PhyloProfile

Description

An example of a final processed & filtered phylogenetic profile.

Usage

data(finalProcessedProfile)

Format

A data frame with 91 rows and 10 variables:

• geneID Seed or ortholog group ID, e.g. "100136at6656"

• supertaxon Supertaxon name together with its ordered index, e.g. "1001_Mammalia"

• supertaxonID Supertaxon ID (only different than ncbiID in case working with higher taxonomy rank than input's). e.g. "40674"

• var1 First additional variable

• presSpec The percentage of species presenting in each supertaxon

• category "cat"

• orthoID Ortholog ID, e.g. "100136at6656|RAT@10116@1|G3V7R8|1"

• var2 Second additional variable

• paralog Number of co-orthologs in the current taxon

• taxonMon Name of supertaxon but without index, e.g. "Mammalia"

PhyloProfile documentation built on March 27, 2021, 6:01 p.m.