getFastaFromFile: Get fasta sequences from main input file in multi-fasta...
In PhyloProfile: PhyloProfile
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Get fasta sequences from main input file in multi-fasta format
Usage
1
getFastaFromFile(seqIDs = NULL, concatFasta = NULL)
Arguments
seqIDs
list of sequences IDs. Set seqIDs = "all" if you want to get
all fasta sequences from the concatenated input fasta file.
concatFasta
input concatenated fasta file.
Value
A dataframe with one column contains sequences in fasta format.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
1
2
3
4
5
concatFasta <- system.file(
"extdata", "fastaFiles/concatenatedFile.fa",
package = "PhyloProfile", mustWork = TRUE
)
getFastaFromFasInput("all", concatFasta)
PhyloProfile documentation built on March 27, 2021, 6:01 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Get fasta sequences from main input file in multi-fasta format
Usage
1 | getFastaFromFile(seqIDs = NULL, concatFasta = NULL)
|
Arguments
seqIDs |
list of sequences IDs. Set seqIDs = "all" if you want to get all fasta sequences from the concatenated input fasta file. |
concatFasta |
input concatenated fasta file. |
Value
A dataframe with one column contains sequences in fasta format.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
1 2 3 4 5 | concatFasta <- system.file(
"extdata", "fastaFiles/concatenatedFile.fa",
package = "PhyloProfile", mustWork = TRUE
)
getFastaFromFasInput("all", concatFasta)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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