createProfileFromOma: Create a phylogenetic profile from a raw OMA dataframe
In PhyloProfile: PhyloProfile
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/getOmaBrowser.R
Description
Create a phylogenetic profile from a raw OMA dataframe
Usage
1
createProfileFromOma(finalOmaDf = NULL)
Arguments
finalOmaDf
raw OMA data for a list of proteins (see ?getDataForOneOma)
Value
Dataframe of the phylogenetic profiles in long format, which
contains the seed protein IDs, their orthologous proteins and the
corresponding taxononmy IDs of the orthologs.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
Examples
1
2
3
print("Uncomment the following lines to run the function")
# omaData <- getDataForOneOma("HUMAN29397", "OG")
# createProfileFromOma(omaData)
PhyloProfile documentation built on March 27, 2021, 6:01 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/getOmaBrowser.R
Description
Create a phylogenetic profile from a raw OMA dataframe
Usage
1 | createProfileFromOma(finalOmaDf = NULL)
|
Arguments
finalOmaDf |
raw OMA data for a list of proteins (see ?getDataForOneOma) |
Value
Dataframe of the phylogenetic profiles in long format, which contains the seed protein IDs, their orthologous proteins and the corresponding taxononmy IDs of the orthologs.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
Examples
1 2 3 | print("Uncomment the following lines to run the function")
# omaData <- getDataForOneOma("HUMAN29397", "OG")
# createProfileFromOma(omaData)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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