getDendrogram: Plot dendrogram tree
In PhyloProfile: PhyloProfile
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/clusterProfile.R
Description
Plot dendrogram tree
Usage
1
getDendrogram(dd = NULL)
Arguments
dd
dendrogram object (see ?clusterDataDend)
Value
A dendrogram plot for the genes in the input phylogenetic profiles.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
Examples
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data("finalProcessedProfile", package="PhyloProfile")
data <- finalProcessedProfile
profileType <- "binary"
profiles <- getDataClustering(
data, profileType, var1AggregateBy, var2AggregateBy)
distMethod <- "mutualInformation"
distanceMatrix <- getDistanceMatrix(profiles, distMethod)
clusterMethod <- "complete"
dd <- clusterDataDend(distanceMatrix, clusterMethod)
getDendrogram(dd)
PhyloProfile documentation built on March 27, 2021, 6:01 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/clusterProfile.R
Description
Plot dendrogram tree
Usage
1 | getDendrogram(dd = NULL)
|
Arguments
dd |
dendrogram object (see ?clusterDataDend) |
Value
A dendrogram plot for the genes in the input phylogenetic profiles.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
Examples
1 2 3 4 5 6 7 8 9 10 | data("finalProcessedProfile", package="PhyloProfile")
data <- finalProcessedProfile
profileType <- "binary"
profiles <- getDataClustering(
data, profileType, var1AggregateBy, var2AggregateBy)
distMethod <- "mutualInformation"
distanceMatrix <- getDistanceMatrix(profiles, distMethod)
clusterMethod <- "complete"
dd <- clusterDataDend(distanceMatrix, clusterMethod)
getDendrogram(dd)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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