getAllDomainsOma: Create domain annotation dataframe from a raw OMA dataframe
In PhyloProfile: PhyloProfile
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/getOmaBrowser.R
Description
Create domain annotation dataframe from a raw OMA dataframe
Usage
1
getAllDomainsOma(finalOmaDf = NULL)
Arguments
finalOmaDf
raw OMA data for a list of proteins (see ?getDataForOneOma)
Value
Dataframe of the domain annotation used for PhyloProfile, which
contains seed IDs, ortholog IDs, ortholog lengths, annotated features, start
and end positions of those features.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
Examples
1
2
3
print("Uncomment the following line to run the function")
# omaData <- getDataForOneOma("HUMAN29397", "OG")
# getAllDomainsOma(omaData)
PhyloProfile documentation built on March 27, 2021, 6:01 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/getOmaBrowser.R
Description
Create domain annotation dataframe from a raw OMA dataframe
Usage
1 | getAllDomainsOma(finalOmaDf = NULL)
|
Arguments
finalOmaDf |
raw OMA data for a list of proteins (see ?getDataForOneOma) |
Value
Dataframe of the domain annotation used for PhyloProfile, which contains seed IDs, ortholog IDs, ortholog lengths, annotated features, start and end positions of those features.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
Examples
1 2 3 | print("Uncomment the following line to run the function")
# omaData <- getDataForOneOma("HUMAN29397", "OG")
# getAllDomainsOma(omaData)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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