fastaParser: Parse multi-fasta input file

Description Usage Arguments Value Author(s) Examples

View source: R/parseMainInput.R

Description

Parse multi-fasta input file

Usage

1
fastaParser(inputFile = NULL)

Arguments

inputFile

input multiple fasta file. Check extdata/test.main.fasta or https://github.com/BIONF/PhyloProfile/wiki/Input-Data#multi-fasta-format for the supported FASTA header.

Value

A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.

Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

Examples

1
2
3
4
inputFile <- system.file(
    "extdata", "test.main.fasta", package = "PhyloProfile", mustWork = TRUE
)
fastaParser(inputFile)

PhyloProfile documentation built on March 27, 2021, 6:01 p.m.