fastaParser: Parse multi-fasta input file
In PhyloProfile: PhyloProfile
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/parseMainInput.R
Description
Parse multi-fasta input file
Usage
1
fastaParser(inputFile = NULL)
Arguments
inputFile
input multiple fasta file. Check extdata/test.main.fasta or
https://github.com/BIONF/PhyloProfile/wiki/Input-Data#multi-fasta-format for
the supported FASTA header.
Value
A data frame of input data in long-format containing seed gene IDs (
or orthologous group IDs), their orthologous proteins together with the
corresponding taxonomy IDs and values of (up to) two additional variables.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
1
2
3
4
inputFile <- system.file(
"extdata", "test.main.fasta", package = "PhyloProfile", mustWork = TRUE
)
fastaParser(inputFile)
PhyloProfile documentation built on March 27, 2021, 6:01 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/parseMainInput.R
Description
Parse multi-fasta input file
Usage
1 | fastaParser(inputFile = NULL)
|
Arguments
inputFile |
input multiple fasta file. Check extdata/test.main.fasta or https://github.com/BIONF/PhyloProfile/wiki/Input-Data#multi-fasta-format for the supported FASTA header. |
Value
A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
1 2 3 4 | inputFile <- system.file(
"extdata", "test.main.fasta", package = "PhyloProfile", mustWork = TRUE
)
fastaParser(inputFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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