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inst/extdata/dist/calculateSbdry.R
In PureCN: Copy number calling and SNV classification using targeted short read sequencing
library(PureCN)
alpha <- formals(segmentationCBS)$alpha
eta <- formals(segment)$eta
nperm <- formals(segment)$nperm
max.ones <- floor(nperm * alpha) + 1
set.seed(123)
purecn.DNAcopy.bdry <- getbdry(eta, nperm, max.ones)
save(purecn.DNAcopy.bdry, file="~/git/PureCN/data/purecn.DNAcopy.bdry.rda", compress="xz")
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PureCN documentation built on Nov. 8, 2020, 5:37 p.m.
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library(PureCN)
alpha <- formals(segmentationCBS)$alpha
eta <- formals(segment)$eta
nperm <- formals(segment)$nperm
max.ones <- floor(nperm * alpha) + 1
set.seed(123)
purecn.DNAcopy.bdry <- getbdry(eta, nperm, max.ones)
save(purecn.DNAcopy.bdry, file="~/git/PureCN/data/purecn.DNAcopy.bdry.rda", compress="xz")
Try the PureCN package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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