Description Usage Arguments Value Author(s) Examples

Based on a design matrix, scores matrices are subtracted, and a new `ScoresList`

is returned, with the scores of the contrasts in it.

1 2 | ```
## S4 method for signature 'ScoresList,matrix'
summarizeScores(scores.list, design, verbose = TRUE)
``` |

`scores.list` |
A |

`design` |
A matrix that contains only -1, 0, or 1. |

`verbose` |
Whether to print a statement explaining the function was called. |

A `ScoresList`

object holding the scores of the contrasts that were
specified by the design matrix.

Dario Strbenac

1 2 3 4 5 6 7 8 | ```
data(chr21genes)
data(samplesList) # Loads 'samples.list.subset'.
fs <- featureScores(samples.list.subset[1:2], chr21genes, up = 2000, down = 1000,
freq = 500, s.width = 500)
d.matrix <- matrix(c(-1, 1))
colnames(d.matrix) <- "IP-input"
summarizeScores(fs, d.matrix)
``` |

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