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inst/examples/cpgDensityPlot_seq.R
In Repitools: Epigenomic tools
library(Repitools)
library(BSgenome.Hsapiens.UCSC.hg18)
# load a saved GRangesList
load("/home/data/Public/Ruike_MeDIPSeq/grl_subset.Rdata")
pdf("CDP.pdf",10,10)
cpgDensityPlot(grl, cols = c("black", "red", "green","blue","orange"),
xlim = c(0,30), wFunction = "none", organism = Hsapiens,
seqLen = 300, lwd = 4, verbose=TRUE)
dev.off()
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Repitools documentation built on Nov. 8, 2020, 7:52 p.m.
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library(Repitools)
library(BSgenome.Hsapiens.UCSC.hg18)
# load a saved GRangesList
load("/home/data/Public/Ruike_MeDIPSeq/grl_subset.Rdata")
pdf("CDP.pdf",10,10)
cpgDensityPlot(grl, cols = c("black", "red", "green","blue","orange"),
xlim = c(0,30), wFunction = "none", organism = Hsapiens,
seqLen = 300, lwd = 4, verbose=TRUE)
dev.off()
Try the Repitools package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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