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inst/examples/mergeReplicates_seq.R
In Repitools: Epigenomic tools
library(Repitools)
library(GenomicRanges)
# Load a saved GRangesList 'grl' into memory.
load("/home/data/Public/Ruike_MeDIPSeq/grl_subset.Rdata")
# > names(grl)
# [1] "HMEC_1" "HMEC_2" "HMEC_I" "MCF7_1_single"
# [5] "MCF7_2" "MCF7_4" "MCF7_EMT_1" "MCF7_EMT_2"
# [9] "MCF7_I"
grl.types <- c("HMEC", "HMEC", "HMECinput", "MCF7", "MCF7", "MCF7", "MCF7EMT", "MCF7EMT", "MCF7input")
merged <- mergeReplicates(grl, grl.types)
# > names(merged)
# [1] "HMEC" "HMECinput" "MCF7" "MCF7EMT" "MCF7input"
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Repitools documentation built on Nov. 8, 2020, 7:52 p.m.
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library(Repitools)
library(GenomicRanges)
# Load a saved GRangesList 'grl' into memory.
load("/home/data/Public/Ruike_MeDIPSeq/grl_subset.Rdata")
# > names(grl)
# [1] "HMEC_1" "HMEC_2" "HMEC_I" "MCF7_1_single"
# [5] "MCF7_2" "MCF7_4" "MCF7_EMT_1" "MCF7_EMT_2"
# [9] "MCF7_I"
grl.types <- c("HMEC", "HMEC", "HMECinput", "MCF7", "MCF7", "MCF7", "MCF7EMT", "MCF7EMT", "MCF7input")
merged <- mergeReplicates(grl, grl.types)
# > names(merged)
# [1] "HMEC" "HMECinput" "MCF7" "MCF7EMT" "MCF7input"
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