getTargetFromLolaDb: getTargetFromLolaDb
In RnBeads: RnBeads
Description
Usage
Arguments
Value
Author(s)
Examples
Description
retrieve or guess the target from a LOLA DB object. Here, target typically
refers to antibodies for ChIP-seq experiments, but could also refer to other annotations
(e.g. motifs in TF motif databases, annotation according to UCSC features etc.)
Usage
1
getTargetFromLolaDb(lolaDb)
Arguments
lolaDb
LOLA DB object as returned by LOLA::loadRegionDB or loadLolaDbs
Value
character vector with targets
Author(s)
Fabian Mueller
Examples
1
2
3
4
5
6
# download LOLA DB
lolaDest <- tempfile()
dir.create(lolaDest)
lolaDirs <- downloadLolaDbs(lolaDest, dbs="LOLACore")
lolaDb <- loadLolaDbs(lolaDirs[["hg19"]])
getTargetFromLolaDb(lolaDb)
RnBeads documentation built on March 3, 2021, 2 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
retrieve or guess the target from a LOLA DB object. Here, target typically refers to antibodies for ChIP-seq experiments, but could also refer to other annotations (e.g. motifs in TF motif databases, annotation according to UCSC features etc.)
Usage
1 | getTargetFromLolaDb(lolaDb)
|
Arguments
lolaDb |
LOLA DB object as returned by |
Value
character vector with targets
Author(s)
Fabian Mueller
Examples
1 2 3 4 5 6 | # download LOLA DB
lolaDest <- tempfile()
dir.create(lolaDest)
lolaDirs <- downloadLolaDbs(lolaDest, dbs="LOLACore")
lolaDb <- loadLolaDbs(lolaDirs[["hg19"]])
getTargetFromLolaDb(lolaDb)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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