is.valid-RnBDiffMeth-methods: is.valid-methods

In RnBeads: RnBeads

Description

Validate an RnBDiffMeth object, ie. verify that all differential methylation tables are specified and accounted for

Usage

## S4 method for signature 'RnBDiffMeth'
is.valid(object, verbose = FALSE)

Arguments

object	RnBDiffMeth object
verbose	print more info to the logger

Value

TRUE iff all differential methylation tables are present and accounted for

Author(s)

Fabian Mueller

Examples

library(RnBeads.hg19)
data(small.example.object)
logger.start(fname=NA)
dm1 <- rnb.execute.computeDiffMeth(rnb.set.example,"Sample_Group",c("genes","tiling"))
dm2 <- rnb.execute.computeDiffMeth(rnb.set.example,c("Sample_Group","Treatment"),"promoters")
dm.join1 <- join.diffMeth(dm1,dm2)
#The following joint object is invalid due to missing region type - comparison combinations
is.valid(dm.join1)
dm3 <- rnb.execute.computeDiffMeth(rnb.set.example,c("Treatment"),c("genes","tiling"))
dm.join2 <- join.diffMeth(dm.join1,dm3)
#After joining the missing information, the new object is valid
is.valid(dm.join2)

RnBeads documentation built on March 3, 2021, 2 a.m.