Description Usage Arguments Value Author(s) Examples
Identifies sample subgroups defined in the given annotation information.
1 2 3 4 5 6 7 | rnb.sample.groups(
annotations,
columns = NULL,
columns.pairs = NULL,
min.group.size = rnb.getOption("min.group.size"),
max.group.count = rnb.getOption("max.group.count")
)
|
annotations |
Methylation dataset as an object of type inheriting |
columns |
Optional; predefined column names (in the form of a |
columns.pairs |
Optional; a NAMED vector containing for each column name for which paired comparisons should be performed (say columnA) the name or index of another column (say columnB) in which same values indicate the same pairing. columnA should be the name of the value columnB in this vector. |
min.group.size |
Minimum number of samples in each subgroup. This must be a positive |
max.group.count |
Maxumum number of subgroups defined by a trait. This must be an |
List of traits that define subgroups in the dataset. For each trait, the defined subgroups are represented by
a list of integer
vectors storing the corresponding sample indices.
Yassen Assenov
1 2 3 | library(RnBeads.hg19)
data(small.example.object)
str(rnb.sample.groups(rnb.set.example))
|
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