createGODataFrame: A function to create a Dataframe from the GO protein...

In ScISI: In Silico Interactome

Description

This function takes a named list (the names are the GO ID's representing some protein complex and the list elements are character vectors consisting of the members of each particular complex) and an Bipartite Graph Incidence Matrix and creates a dataframe with three columns: complex name, GO ID, and complex description.

Usage

createGODataFrame(cMembers, goMat)

Arguments

cMembers	Named list with GO ID's as names and character vector consisting of proteins of the respective complex
goMat	Bipartite Graph Incidence Matrix

Details

This function takes the output parameters of createGOMatrix and getGOInfo and creates the bipartite graph incidence matrix.

Value

Dataframe:

names	The names of the GO Complexes
ID	The GO IDs' of the complexes
description	The description give by GO

Author(s)

Tony Chiang

References

www.geneontology.org

Examples

#go = getGOInfo(wantAllComplexes = FALSE)
#goM = createGOMatrix(go)
#createGODF(go, goM)

ScISI documentation built on Nov. 8, 2020, 5:48 p.m.