Description Usage Arguments Value Author(s)
View source: R/graphSumStats.R
This function takes an in silico interactome and a list of Y2H experimental data (see details) and generates various graph summary statistics.
1 | graphSumStats(ISI, bait2PreyL)
|
ISI |
An incidence matrix representation of a bi-partite graph of an in silico interactome |
bait2PreyL |
A list of y2h information. The data structure is that of intactInfo.rda of the y2hStat package |
complex |
A character vector of the constituent members of the proteinn complex of interest |
complexBait |
A character vector of those protein members which were also tested as baits in the y2h experiment |
notBait |
A character vector of those protein members which were not tested as baits |
avgDegOut |
The average out-degree of the bait proteins of the complex of interest |
notIsolated |
A character vector of proteins that showed experimental binary affiliation for some other complex member |
y2hGraph |
An instance of the class graph; a graphNEL induceds Y2H graph on the protein complex |
popMeanDegree |
The population mean degree derived from the bait proteins |
edgeProp |
The estimated edge proportions derived between undirected Y2H edges |
degBait |
A named list; each name corresponds to each member of the protein complex with the entry the number of proteins to which it is adjacent |
T Chiang
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