SeqArray: Data management of large-scale whole-genome sequence variant calls

Data management of large-scale whole-genome sequencing variant calls with thousands of individuals: genotypic data (e.g., SNVs, indels and structural variation calls) and annotations in SeqArray GDS files are stored in an array-oriented and compressed manner, with efficient data access using the R programming language.

Package overview README.md Integration with R SeqArray Data Format and Access SeqArray Overview

Vignettes Man pages API and functions Files

Package details
Author	Xiuwen Zheng [aut, cre] (<https://orcid.org/0000-0002-1390-0708>), Stephanie Gogarten [aut], David Levine [ctb], Cathy Laurie [ctb]
Bioconductor views	DataRepresentation Genetics Infrastructure Sequencing
Maintainer	Xiuwen Zheng <zhengx@u.washington.edu>
License	GPL-3
Version	1.30.0
URL	http://github.com/zhengxwen/SeqArray
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SeqArray")`