R/StarBioTrek.r

In StarBioTrek: StarBioTrek

#' Download data
#'
#' StarBioTrek allows you to Download data of samples from StarBioTrek
#'
#' The functions you're likely to need from \pkg{StarBioTrek} is
#' \code{path_star}
#'Otherwise refer to the vignettes to see
#' how to format the documentation.
#'
#' @docType package
#' @name StarBioTrek
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#' pathway data list
#' @docType data
#' @keywords internal
#' @name path
#' @format A list of dataframe
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#' pathway data list
#' @docType data
#' @keywords internal
#' @name Data_CANCER_normUQ_fil
#' @format A dataframe with gene expression profiles
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#' pathway data
#' @docType data
#' @keywords internal
#' @name pathway
#' @format A data frame with  rows and variables
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#' network data for IPPI fucntion
#' @docType data
#' @keywords internal
#' @name netw_IPPI
#' @format A list
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#' network data
#' @docType data
#' @keywords internal
#' @name pathway_matrix
#' @format A data frame with  rows and variables
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#' network data
#' @docType data
#' @keywords internal
#' @name netw
#' @format A data frame with  rows and variables
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#' All pathways data from KEGG
#' @docType data
#' @keywords internal
#' @name path_KEGG
#' @format A list of pathways with the involved genes
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#' Score Matrix of pairwise pathway using euclidean distance
#' @docType data
#' @keywords internal
#' @name score_euc_dista
#' @format A data frame with rows and variables
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#' TCGA data with normal samples
#' @docType data
#' @keywords internal
#' @name norm
#' @format A data frame with rows and variables
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#' TCGA data with tumour samples
#' @docType data
#' @keywords internal
#' @name tumo
#' @format A data frame with rows and variables
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