declare.bound: Declare bound probes for a given error rate control

In Starr: Simple tiling array analysis of Affymetrix ChIP-chip data

Description

An internal function to be used by cmarrt.peak.

Usage

declare.bound(alpha, method, pv.cmarrt, pv.indep)

Arguments

alpha	error rate control for declaring bound region.
method	correction method inherited from p.adjust.
pv.cmarrt	a numeric vector of p-values for MA statistics obtained under correlation structure via Gaussian approximation.
pv.indep	a numeric vector of p-values for MA statistics obtained under independence via Gaussian approximation.

Value

bdd.cmarrt	vector of 0's(unbound) or 1's(bound) for each probe under correlation.
bdd.indep	vector of 0's(unbound) or 1's(bound) for each probe under independence.

Author(s)

Pei Fen Kuan, Adam Hinz

References

P.F. Kuan, H. Chun, S. Keles (2008). CMARRT: A tool for the analysiz of ChIP-chip data from tiling arrays by incorporating the correlation structure. Pacific Symposium of Biocomputing13:515-526.

See Also

cmarrt.peak

Starr documentation built on April 28, 2020, 7:52 p.m.