plot.gcBias: Visualize GC-Bias of Hybridization
In Starr: Simple tiling array analysis of Affymetrix ChIP-chip data

Description Usage Arguments Author(s) See Also Examples

Generates a plot showing the GC-bias of the hybridization.

1	plotGCbias(intensity, sequence, main="")

`intensity`	a vector of type numeric, containing the measured intensities.
`sequence`	a vector of type character, containing the sequences.
`main`	head of the plot

Benedikt Zacher zacher@lmb.uni-muenchen.de

boxplot

##
sequence <- unlist(lapply(1:50000, function(x) {paste(sample(c("A","T","C","G"),prob=c(0.3,0.3,0.2,0.2),25,replace=TRUE), collapse="")}))
values <- runif(50000,min=-2,max=2)
plotGCbias(values, sequence)