Files in Starr
Simple tiling array analysis of Affymetrix ChIP-chip data
configure.in
configure
NAMESPACE
DESCRIPTION
build/vignette.rds
src/rm_small_peak.h
src/sort_by_genomic.h
src/collect.c
src/kseq.h
src/Makevars.win
src/Makevars.in
src/ahocorasick.c
src/fixed_gen_dist2.h
src/Makevars
src/sort_by_genomic.c
src/collect.h
src/rm_small_peak.c
R/RGlist2ExpresionSet.R
R/whichIn.R
R/profileplot.R
R/plotProfiles.R
R/makeSplines.R
R/parseGffAnnotation.R
R/writeWIG.R
R/AhoCorasick.R
R/sort.by.genomic.R
R/readCelFile.R
R/rm.small.peak.R
R/getProfilesMiddle.R
R/declare.bound.R
R/plot.cmarrt.R
R/getProfiles.R
R/Normalization.R
R/ma.stat.R
R/cmarrt.ma.R
R/list2matrix.R
R/quality_control.R
R/cmarrt.peak.R
R/writeGFF.R
R/getProfilesByBase.R
R/correlationPlot.R
R/heatmapplot.R
R/backgd.sd.R
R/geneExpression.R
R/makeProbeAnno.R
vignettes/bibliography.bib
vignettes/Starr.Rnw
man/getFeatures.Rd
man/plotProfiles.Rd
man/whichIn.Rd
man/writePosFile.Rd
man/sort.by.genomic.Rd
man/plot.ratioScatter.Rd
man/mapFeatures.Rd
man/getIntensites.Rd
man/readCelFile.Rd
man/cmarrt.peak.Rd
man/ma.stat.Rd
man/getProfilesByBase.Rd
man/fill.Rd
man/declare.bound.Rd
man/correlationPlot.Rd
man/makeProbeAnno.Rd
man/makeSplines.Rd
man/getMeans.Rd
man/plot.image.Rd
man/getProfiles.Rd
man/remap.Rd
man/writeGFF.Rd
man/rankPercentile.normalize.Rd
man/backgd.sd.Rd
man/plot.scatter.Rd
man/normalize.Probes.Rd
man/bpmapToProbeAnno.Rd
man/plot.ma.Rd
man/windowxy.Rd
man/plot.cmarrt.Rd
man/getRatio.Rd
man/intersection.Rd
man/plot.Density.Rd
man/singleclusterplot.Rd
man/expressionByFeature.Rd
man/list2matrix.Rd
man/rm.small.peak.Rd
man/RGlist2ExpressionSet.Rd
man/profileplot.Rd
man/read.gffAnno.Rd
man/writeWIG.Rd
man/plot.boxes.Rd
man/correlate.Rd
man/cmarrt.ma.Rd
man/match_ac.Rd
man/filterGenes.Rd
man/heatmapplot.Rd
man/substract.Rd
man/densityscatter.Rd
man/sameLength.Rd
man/fillNA.Rd
man/plot.gcBias.Rd
man/kde2dplot.Rd
man/plot.posBias.Rd
inst/doc/Starr.pdf
inst/doc/Starr.Rnw
inst/doc/Starr.R
inst/extdata/chrI.fa
inst/extdata/Scerevisiae_tlg_chr1.bpmap
inst/extdata/Rpb3_IP2_chr1.cel
inst/extdata/Rpb3_IP_chr1.cel
inst/extdata/transcriptAnno.gff
inst/extdata/wt_IP_chr1.cel
