match_ac: Exact String matching using the Aho-Corasick algorithm

Description Usage Arguments Author(s)

View source: R/AhoCorasick.R

Description

The Algorithm is designed to match a given set of sequences to a text. This function is used by remap for mapping reporter sequences to the genome.

Usage

1
match_ac(dictionary, text, complementary=FALSE, reverse=FALSE, reverse_complementary=FALSE, nseq)

Arguments

dictionary

Set of sequences, given as a character vector

text

At least one text, to match the sequences to.

complementary

If TRUE, the sequences are searched in the complementary strand of the text

reverse

If TRUE, the sequences are searched in the reverse strand of the text

reverse_complementary

If TRUE, the sequences are searched in the reverse complementary strand of the text

nseq

number of sequences to search in one run

Author(s)

Benedikt Zacher zacher@lmb.uni-muenchen.de


Starr documentation built on April 28, 2020, 7:52 p.m.